Segmentation Workspace

The Segmentation Workspace allows to segment an Image form passed as input into a Cell Image form, where cells are represented as image regions carrying identical labels.


You can find a detailed tutorial for the Segmentation Workspace in the

The plugins performing cell segmentation usually consist in two phases: a cell detection and an image segmentation. In some cases, plugins will accept a PointCloud input providing the result of the cell detection. In the resulting CellImage output, there will then be one cell for each point of the input PointCloud form.


Plugins for this workspace can be installed with the following plugin package(s):

gnomon-utils package install gnomon_package_tissueimage