Examples

Image Analysis Scenarios

These examples provide a variety of scenarios for simple 3D image-related tasks. They detail step by step the interactions you will need to perform, and are a good way to get an overview of the possibilities of the Gnomon platform for image analysis.

Warning

This section is under construction! Some information might be missing.

Image Segmentation

Load a 3D intensity image and extract the cells into labelled regions.

Image Enhancement

Load a 3D image and enhance the signal to improve its segmentation.

Image Registration

Load a series of images and align them using a geometric transformation.

Image Python Plugin

Load an image and directly code the next processing step in Python.

Note

All the data files used in these examples can be found in the gnomon-data repository.